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  • Item type:Item,
    Future of Archives: The Impact of Computerization on Archival Development in Vietnam and Experiences from Germany
    (2026) Phong, Vu Dinh
    This study, “Future of Archives: The Impact of Computerization on Archival Development in Vietnam and Experiences from Germany,” is an empirical investigation that examines how computerization reshapes archival development in Vietnam and Germany. It traces the field’s shift from traditional to digital archives, clarifying the opportunities and risks that arise along the way. Rather than treating computerization as a purely technological shift, the study conceptualizes it as a socio-institutional transformation that redefines archival authority, lifecycle management, and public access. In Vietnam, the research focused on the activities of the four National Archives Centers, namely Centers I, II, III, and the National Archives Center for Digital and Preventive Records, as well as selected provincial and local historical archives. The author conducted a six-month internship at the National Archives Center III to observe digital operations and professional practices. In Germany, the Hessian State Archives (Hessisches Landesarchiv, HLA) serves as the primary case study, representing a mature, standardized, and legally integrated model of digital archiving. Methodologically, the study adopted a comparative case-study methodology, combining qualitative and documentary approaches. Data were collected through 24 semi-structured interviews with archivists, policymakers, IT experts, and institutional leaders, complemented by an analysis of relevant primary and secondary sources. This empirical design provided a comprehensive understanding of archival development in both countries, revealing how legal frameworks, institutional arrangements, professional capacities, technological infrastructures, and user-oriented factors interact to shape their trajectories toward digital transformation. Building on the Socio-Technical systems theory, Institutional Theory and Isomorphism, and Innovation Diffusion and Technology Acceptance Model frameworks (Chapter II), the study conceptualizes computerization not merely as a technological shift but as a socio-institutional process that redefines archival practices, professional competencies, and user engagement. The analysis (Chapters V, VI, and VII) reveals that HLA represents a coherent and OAIS-conformant digital ecosystem that integrates DIMAG for preservation and Arcinsys for access. In Vietnam, digital transformation has accelerated significantly in recent years, particularly with the adoption of the 2024 Archives Law and related implementing regulations. This normative modernization represents a major institutional milestone. However, implementation remains uneven across administrative levels. While the legal framework provides a comprehensive foundation, operational standardization, interoperability, hybrid professional capacity, and preservation infrastructure consolidation require further strengthening. The key divergence between the two countries, therefore, lies not in legal recognition of digital archives but in the degree of governance consolidation and operational coherence. In both contexts, the digital transformation of archives reflects multiple interconnected developments: (1) digitization of analog materials; (2) online discovery and metadata dissemination; (3) remote access to digital surrogates; (4) governance of born-digital records; and (5) adoption of emerging technologies such as AI and digital platforms (Chapter IX). These advances improve accessibility and automation, but heighten risks related to authenticity, privacy, cybersecurity, sustainability, and ethics, requiring continuous investment and governance innovation (Chapter X). This dissertation approaches the future of archives not as a fixed or prescriptive concept; however, within this field, the study identifies the hybrid archives as a context-specific model of archival future, one that reflects the co-existence of analog and digital logics, the interaction of technology and institution, and the balance between continuity and innovation (Chapter VIII). Policy recommendations emphasize (i) legal reform and standards for transfer/metadata; (ii) trusted digital repositories and OAIS-aligned preservation; (iii) workforce transformation toward hybrid competencies; (iv) user-centered services and open access; and (v) cybersecurity and ethical frameworks (Chapter VII, Chapter X). The comparative analysis suggests that experiences from German archives, particularly the HLA, provide valuable and transferable insights for informing the future development of archival institutions in Vietnam. Despite its specific focus on Vietnam and Germany, the study also contributes to broader discussions concerning the integration of digital technologies into archival systems and the institutional adaptation of archives in the digital age.
  • Item type:Item,
    Data for "Sampling Uncertainty of Research Topics"
    (2026-06) Naboka-Krell, Viktoriia
    The replication package contains the data and analysis codes for the study "Sampling Uncertainty of Research Topics", which examines the measurement of sampling uncertainty in latent topic models. The dataset comprises 19,059 abstracts submitted to the European Research Consortium for Informatics and Mathematics (ERCIM) and Computational and Financial Econometrics (CFE) conferences between 2007 and 2023. The abstracts have an average length of 158 words (including title) and underwent standardized preprocessing: After removing special characters, numbers, and stopwords, as well as lemmatization (using spaCy with the en_core_web_lg model), a vocabulary of 1,844 unique words remained. **Contents of the ZIP Files** *Data_Simulations.zip* Contains the raw data, processed datasets, and all analysis results relevant to the main study. This includes: - The original abstracts (before and after preprocessing), - The generated bootstrap corpora (for resampling analyses), - The estimated topic models (including document-specific topic weights), - The computed model fit metrics (e.g., sBIC for determining the optimal number of topics), - The Python and R code for data preprocessing, model estimation (including Structural Topic Modeling), and bootstrap analysis, - The results for Figures 1–5 and Tables 1–2 of the paper (e.g., sBIC trends, topic weights, recall metrics). *Algorithm_Confidence_Bands_Word_Clouds.zip* Includes the MATLAB code for generating uncertainty-adjusted word clouds (Figure 6 in the paper). This algorithm visualizes the robustness of topic-word probabilities across bootstrap replications by generating confidence bands for the top words of each topic. *Algorithm_Counts_Top_Flop.zip* Contains the MATLAB code for calculating the top and flop words for selected topics (basis for Figure 7). The code identifies the most and least stable words within a topic across all bootstrap samples, enabling a qualitative assessment of topic stability. *Algorithm_Topic_Time_Series.zip* Includes the code for generating the topic time series (basis for Figure 8). This algorithm aggregates document-specific topic weights on an annual basis and computes confidence bands for the temporal evolution of topic prevalence.
  • Item type:Item,
    Gender Health Gap: Systemische Versorgungsunterschiede in der Medizin
    (2026-06-22) Lutz, JohannaUncovering Medicine
  • Item type:Item,
    Profiling urinary bile acids by targeted liquid chromatography-tandem mass spectrometry
    (2025) Schauermann, Marcel
    Bile acids (BA) are C24 steroids synthesized from cholesterol in the liver. Apart from emulsification of fatty food components, they function as endocrine signaling molecules. As such, bile acids bear great potential as future biomarkers in diagnosis and monitoring of metabolic diseases. However, hardly any data exist on BA in urine. Therefore, the present study aimed at developing and implementing a new method for the quantification of urinary bile acids using targeted liquid chromatography-tandem mass spectrometry (LC-MS/MS). The targeted approach included 18 BA: the primary BA cholic acid (CA) and chenodeoxycholic acid (CDCA), and the secondary BA deoxycholic acid (DCA) and lithocholic acid (LCA) as well as glycine and taurine conjugates of these four BA. Furthermore, ursodeoxycholic acid (UDCA) and five BA in their sulfated forms (LCA-S, GLCA-S, TLCA-S, GCDCA-S, GDCA-S) were analyzed. Another goal consisted in presenting first reference values of urinary bile acids during childhood and to investigate their excretion patterns in obese children and adolescents. Finally, potential correlations between urinary bile acids and nutrition were examined. The method required 2 mL of urine and sample preparation consisting of protein precipitation and solid phase extraction. Stable isotopes of BA were included as internal standards (IS). The method was successfully validated and then applied to samples of 80 healthy children as well as 237 obese children of various age groups. The results were presented in three different units ([nmol/L], [nmol BA/mmol Crea] and [nmol/d]). Regardless of the unit, sulfated bile acids (GCDCA-S, GLCA-S, GDCA-S, TLCA-S) dominated in both study groups, CA and GCA were the two dominant non-sulfated BA. Lower bile acid sulfation and amidation in obese children may point to obesity-related limitations in hepatic metabolic capacity. Glycine-amidation appeared to be less prone to obesity-related impairments. Urinary concentration of GCDCA-S decreased with higher carbohydrate intake, while it increased with higher fat or protein intake, respectively.
  • Item type:Item,
    Analysis of Hepatitis C Virus cis-elements involved in the Initiation of Negative-Strand RNA Synthesis
    (2026-03) Malik, Attiya Qadoos
    Hepatitis C Virus infects approximately 3 % of the global population. Because infection often remains asymptomatic for long periods, many cases progress unnoticed to severe liver diseases such as cirrhosis, hepatocellular carcinoma or chronic liver failure. HCV possesses a positive-strand RNA genome that replicates via negative-strand RNA intermediate. While many aspects of HCV replication are well studied, comparatively little is known about the cis-acting RNA elements on the positive-strand genome that are involved in the initiation of negative-strand RNA synthesis. Studying negative-strand RNA synthesis poses major technical challenges, particularly due to background signals that obscure accurate detection. The background signals arise from false priming (1) during in vitro-transcription and (2) during reverse transcription due to the strong hairpin structure at the 3´end of the RNA genome and (3) contaminating residual plasmid DNA and transfected RNA that serves as a false template during cDNA synthesis. Furthermore, it is essential to measure negative-strand RNA synthesis uncoupled from other viral processes such as translation and positive-strand RNA replication. To address these challenges, an HCV subgenomic (4th generation) replicon system was developed combined with a highly optimized strand-specific RNA detection assay. The system allows precise detection of newly synthesized negative-strand RNA with negligible background. Template DNA contamination from in vitro-transcribed RNA was (nearly) completely eliminated by two rounds of DNase digestion followed by RNA purification using Monarch kit columns. Total RNA extracted using TRIzol also underwent additional DNase treatments, acidic phenol/chloroform extraction and column-based purification to further enhance RNA quality. To selectively detect RNA new transcribed only after transfection of the replicon, 5EU-labelling was used in combination with Click iT chemistry. The 5EU-labelled nascent RNA was biotinylated, captured using streptavidin beads, and subjected to ten stringent washing steps before analysis by RT-qPCR. High temperature conditions during reverse transcription (65 °C) and qPCR (62 °C) further minimized nonspecific amplification. This approach reduced the background signals from polymerase deficient negative controls to only 0.02 - 0.035 %, representing an approximately 975-fold improvement over earlier methods in the Niepmann laboratory using 1st generation replicon system and conventional RNA purification procedures. Using this highly sensitive platform, the study identified the SLI-II region of the HCV 5´UTR as the minimal essential cis-acting element required for the initiation of negative-strand RNA synthesis. The SLI-III domain, which comprises the IRES region of the HCV 5´UTR, supported about 34.5 % of the overall efficiency of the negative-strand RNA synthesis. In contrast, mutations disrupting binding of eIF3 or the 40S subunit (∆IIIb and mutIIId/e) caused a drastic reduction in negative-strand RNA levels, both in SLI-III as well as in complete 5´UTR construct. These findings underscore the essential role of an intact HCV 5´UTR in genome replication and suggest that recruitment of eIF3 and the small ribosomal 40S subunit positively regulate negative-strand RNA synthesis. Similar to the PCBP2 protein, these factors may bridge the 5´- and 3´-ends of the viral genome, promoting genome circularization. Competitive binding of NS5B dimer or oligomer to the 5´UTR may disrupt this interaction, enabling replication via NS5B binding to the 3´-end. Such interactions may function as a checkpoint determining whether the genome undergoes translation and/or replication. Detection of negative-strand RNA is currently reliable only from 24 hpt onward, and further optimization is required to analyse initiation events at earlier time points.